I wanted to kill a giant firaxan shark, so I poisoned it. You can also use the Windows Key + R key combination in order to open up the Run dialog box. It's off to fight Malak alone. You overloaded the fuel tanks for the kolto harvesting machinery and caused it to explode. As much as I don't care about having access to it I really want to complete the Genoharadan quest line. You can actually bypass the Flow Control room as theres another way around to the other side. Bastila has been called away from doing her Battle Meditation to speak with Darth Malak. Darth Malak's intentions with Bastila are the same as they were with sending a slew of Sith Soldiers and Dark Jedi/Dark Jedi Apprentices after you - he has no intentions of her beating you, but it'll slow her down until he can do what he needs to do with the Star Forge.